Ze Zhang

Hangzhou, China

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I’m Ze Zhang (张泽). I am a Ph.D. candidate at University of Chinese Academy of Sciences. I am engaged in interdisciplinary research in bioinformatics, including AI & biological big data omics research and bioinformatics databases tools at Hangzhou Institute for Advanced Study, UCAS (Since 2021.09), led by Prof. Xiaoping Liu. Currently I am pursuing a Ph.D. degree in Bioinformatics, focusing on bioinformatics intelligent algorithm development. It is jointly cultivated by HIAS, UCAS and BGI Hangzhou, BGI·Research (Since 2023.09), led by Prof. Luonan Chen and Prof. Xun Xu. Previously, I obtained my Bachelor’s degree in Information Security from Nanchang University.

Education Experience

Interests

  • AI & bioinformatics algorithms
  • Databases and smart tools platform
  • Single cell and Spatial transcriptomics

Skills

  • Data Mining, Software Design
  • PyTorch, Vue, Django, Express, Element Plus
  • Python, TypeScript, R
  • Blogging, Basketball, Swimming, Nunchakus

Email

Community

Collaborators

news

Mar 21, 2025 FACdb is a milestone for me! ✨✨✨
Apr 10, 2024 Contributed to a project that was published in Nature !!! ✨✨✨
May 17, 2023 Successfully transitioned from a master’s program to a doctoral program. 😊
Jan 27, 2023 My first paper has been published online. ✨
Jun 01, 2021 Graduated with a bachelor’s degree from Nanchang University. 🎓🎓🎓

selected publications

  1. about_FACdb.jpg
    FACdb: a comprehensive resource for genes, gut microbiota, and metabolites in farm animals
    Ze Zhang† ,  Yang Li† ,  Di Zhang† ,  Shuai Chen* ,  Sien Lu ,  Kang Wang ,  Miao Zhou ,  Zehe Song ,  Qingcui Li* ,  Jie Yin* ,  and  Xiaoping Liu*
    Frontiers in Microbiology, Mar 2025
  2. about_CASA.png
    Sex differences orchestrated by androgens at single-cell resolution
    Fei Li† ,  Xudong Xing† ,  Qiqi Jin† ,  Xiang-Ming Wang† ,  Pengfei Dai† ,  Ming Han† ,  Huili Shi ,  Ze Zhang ,  Xianlong Shao ,  Yunyi Peng ,  Yiqin Zhu ,  Jiayi Xu ,  Dan Li ,  Yu Chen ,  Wei Wu ,  Qiao Wang ,  Chen Yu* ,  Luonan Chen* ,  Fan Bai* ,  and  Dong Gao*
    Nature, Apr 2024
  3. about_RSIT.png
    Earthquake alerting based on spatial geodetic data by spatiotemporal information transformation learning
    Yuyan Tong† ,  Renhao Hong† ,  Ze Zhang ,  Kazuyuki Aihara ,  Pei Chen* ,  Rui Liu* ,  and  Luonan Chen*
    Proceedings of the National Academy of Sciences, Sep 2023
  4. about_TeCD.png
    TeCD: The eccDNA Collection Database for extrachromosomal circular DNA
    Jing Guo† ,  Ze Zhang† ,  Qingcui Li ,  Xiao Chang* ,  and  Xiaoping Liu*
    BMC Genomics, Jan 2023


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